HL_4V8F_077

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

4V8F|1|BA|U|189, 4V8F|1|BA|G|190, 4V8F|1|BA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_077 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.3351

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

4V8F|1|BA|C|186|||F
4V8F|1|BA|C|187
4V8F|1|BA|U|188
4V8F|1|BA|U|189
4V8F|1|BA|G|190
4V8F|1|BA|G|191
4V8F|1|BA|G|191|||A

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S RIBOSOMAL PROTEIN S17

Chain BW

30S RIBOSOMAL PROTEIN S20