HL_4V8F_080

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_080 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1173

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8F|1|BA|U|296
4V8F|1|BA|G|297
4V8F|1|BA|A|298
4V8F|1|BA|G|299
4V8F|1|BA|A|300
4V8F|1|BA|G|301

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain BH

30S RIBOSOMAL PROTEIN S5

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BT

30S RIBOSOMAL PROTEIN S17