HL_4V8F_081

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_081 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1015

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8F|1|BA|C|320
4V8F|1|BA|A|321
4V8F|1|BA|C|322
4V8F|1|BA|U|323
4V8F|1|BA|G|324
4V8F|1|BA|A|325
4V8F|1|BA|G|326
4V8F|1|BA|A|327
4V8F|1|BA|C|328
4V8F|1|BA|A|329
4V8F|1|BA|C|330
4V8F|1|BA|G|331
4V8F|1|BA|G|332
4V8F|1|BA|G|333

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain BW

30S RIBOSOMAL PROTEIN S20