HL_4V8F_082

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V8F|1|BA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_082 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.4541

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4V8F|1|BA|C|342
4V8F|1|BA|U|343
4V8F|1|BA|A|344
4V8F|1|BA|C|345
4V8F|1|BA|G|346
4V8F|1|BA|G|347

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L14

Chain AR

50S ribosomal protein L19

Chain BW

30S RIBOSOMAL PROTEIN S20