HL_4V8F_099

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4V8F|1|BA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_099 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.1927

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BA|G|1134
4V8F|1|BA|U|1135
4V8F|1|BA|U|1136
4V8F|1|BA|C|1137
4V8F|1|BA|G|1138
4V8F|1|BA|G|1139
4V8F|1|BA|C|1140

Current chains

Chain BA

16S ribosomal RNA

Nearby chains