HL_4V8F_103
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 4V8F|1|BA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_103 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1124
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8F|1|BA|G|1356
4V8F|1|BA|A|1357
4V8F|1|BA|U|1358
4V8F|1|BA|C|1359
4V8F|1|BA|A|1360
4V8F|1|BA|G|1361
4V8F|1|BA|C|1362
4V8F|1|BA|C|1362|||A
4V8F|1|BA|A|1363
4V8F|1|BA|U|1364
4V8F|1|BA|G|1365
4V8F|1|BA|C|1366
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BL
- 30S RIBOSOMAL PROTEIN S9
- Chain BM
- 30S RIBOSOMAL PROTEIN S10
- Chain BP
- 30S RIBOSOMAL PROTEIN S13
- Chain BQ
- 30S RIBOSOMAL PROTEIN S14
- Chain BX
- 30S RIBOSOMAL PROTEIN THX
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