HL_4V8F_143

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_143 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.143

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8F|1|CA|C|1165
4V8F|1|CA|G|1166
4V8F|1|CA|A|1167
4V8F|1|CA|A|1169
4V8F|1|CA|A|1170
4V8F|1|CA|G|1171

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S RIBOSOMAL PROTEIN S2