HL_4V8F_165

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V8F|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_165 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0721

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V8F|1|DA|G|194
4V8F|1|DA|A|195
4V8F|1|DA|A|196
4V8F|1|DA|A|197
4V8F|1|DA|C|198
4V8F|1|DA|A|199
4V8F|1|DA|U|200
4V8F|1|DA|C|201

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DO

50S ribosomal protein L15

Chain DZ

50S ribosomal protein L28