HL_4V8F_172

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V8F|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_172 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.087

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8F|1|DA|G|382
4V8F|1|DA|U|383
4V8F|1|DA|U|384
4V8F|1|DA|C|385
4V8F|1|DA|G|386
4V8F|1|DA|U|387
4V8F|1|DA|G|388
4V8F|1|DA|G|389
4V8F|1|DA|A|390
4V8F|1|DA|G|391
4V8F|1|DA|C|392

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DO

50S ribosomal protein L15

Chain DZ

50S ribosomal protein L28