HL_4V8F_179

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_179 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.1092

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8F|1|DA|G|629
4V8F|1|DA|G|630
4V8F|1|DA|A|631
4V8F|1|DA|A|632
4V8F|1|DA|A|633
4V8F|1|DA|C|634

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15