HL_4V8F_192

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_192 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.0696

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8F|1|DA|C|1223
4V8F|1|DA|G|1224
4V8F|1|DA|C|1225
4V8F|1|DA|G|1226
4V8F|1|DA|A|1227
4V8F|1|DA|G|1228

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain D2

50S ribosomal protein L21

Chain DO

50S ribosomal protein L15