HL_4V8F_197

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_197 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.1142

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8F|1|DA|C|1451
4V8F|1|DA|A|1453
4V8F|1|DA|U|1454
4V8F|1|DA|G|1455
4V8F|1|DA|G|1456
4V8F|1|DA|A|1457
4V8F|1|DA|C|1458
4V8F|1|DA|G|1459

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D0

50S ribosomal protein L17