HL_4V8F_205

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_205 not in the Motif Atlas

Homologous match to HL_7RQB_044

Geometric discrepancy: 0.078

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8F|1|DA|C|1752
4V8F|1|DA|G|1753
4V8F|1|DA|C|1754
4V8F|1|DA|A|1755
4V8F|1|DA|G|1756

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DR

50S ribosomal protein L19