HL_4V8F_214
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 4V8F|1|DA|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_214 not in the Motif Atlas
- Homologous match to HL_4WF9_049
- Geometric discrepancy: 0.1025
- The information below is about HL_4WF9_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V8F|1|DA|C|2248
4V8F|1|DA|U|2249
4V8F|1|DA|G|2250
4V8F|1|DA|G|2251
4V8F|1|DA|G|2252
4V8F|1|DA|G|2253
4V8F|1|DA|C|2254
4V8F|1|DA|G|2255
4V8F|1|DA|G|2256
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain D3
- 50S ribosomal protein L27
- Chain DP
- 50S ribosomal protein L16
Coloring options: