3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
4V8F|1|DA|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_214 not in the Motif Atlas
Homologous match to HL_4WF9_049
Geometric discrepancy: 0.1025
The information below is about HL_4WF9_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V8F|1|DA|C|2248
4V8F|1|DA|U|2249
4V8F|1|DA|G|2250
4V8F|1|DA|G|2251
4V8F|1|DA|G|2252
4V8F|1|DA|G|2253
4V8F|1|DA|C|2254
4V8F|1|DA|G|2255
4V8F|1|DA|G|2256

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain CC
Transfer RNA; tRNA
Chain D3
50S ribosomal protein L27
Chain DP
50S ribosomal protein L16

Coloring options:


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