HL_4V8F_221

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4V8F|1|DA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_221 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.3285

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8F|1|DA|C|2471
4V8F|1|DA|G|2472
4V8F|1|DA|U|2473
4V8F|1|DA|C|2474
4V8F|1|DA|C|2475
4V8F|1|DA|A|2476
4V8F|1|DA|C|2477
4V8F|1|DA|A|2478
4V8F|1|DA|G|2479

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

TRNA-TYR