HL_4V8F_249

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCCG

Length

4 nucleotides

Bulged bases

4V8F|1|DA|C|2145, 4V8F|1|DA|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_249 not in the Motif Atlas

Geometric match to HL_2CZJ_009

Geometric discrepancy: 0.3977

The information below is about HL_2CZJ_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78677.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V8F|1|DA|U|2144
4V8F|1|DA|C|2145
4V8F|1|DA|C|2146
4V8F|1|DA|G|2147

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CN

30S RIBOSOMAL PROTEIN S11