HL_4V8G_060

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGACAGCGGUCGAG

Length

17 nucleotides

Bulged bases

4V8G|1|BA|A|1046, 4V8G|1|BA|C|1052, 4V8G|1|BA|G|1106

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8G_060 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1396

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8G|1|BA|C|1043
4V8G|1|BA|G|1044
4V8G|1|BA|A|1045
4V8G|1|BA|A|1046
4V8G|1|BA|G|1047
4V8G|1|BA|A|1048
4V8G|1|BA|C|1049
4V8G|1|BA|A|1050
4V8G|1|BA|G|1051
4V8G|1|BA|C|1052
4V8G|1|BA|G|1106
4V8G|1|BA|G|1107
4V8G|1|BA|U|1108
4V8G|1|BA|C|1109
4V8G|1|BA|G|1110
4V8G|1|BA|A|1111
4V8G|1|BA|G|1112

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6