HL_4V8G_142

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

4V8G|1|DA|G|321, 4V8G|1|DA|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8G_142 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.102

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8G|1|DA|C|319
4V8G|1|DA|A|320
4V8G|1|DA|G|321
4V8G|1|DA|A|322
4V8G|1|DA|G|323

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DY

50S Ribosomal Protein L24