HL_4V8G_183

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V8G|1|DA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8G_183 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0817

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8G|1|DA|C|2248
4V8G|1|DA|U|2249
4V8G|1|DA|G|2250
4V8G|1|DA|G|2251
4V8G|1|DA|G|2252
4V8G|1|DA|G|2253
4V8G|1|DA|C|2254
4V8G|1|DA|G|2255
4V8G|1|DA|G|2256

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S Ribosomal Protein L27

Chain DQ

50S Ribosomal Protein L16