HL_4V8G_207

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4V8G|1|CA|U|189|||F, 4V8G|1|CA|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8G_207 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3277

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V8G|1|CA|C|189|||B
4V8G|1|CA|C|189|||C
4V8G|1|CA|C|189|||D
4V8G|1|CA|U|189|||E
4V8G|1|CA|U|189|||F
4V8G|1|CA|G|189|||G
4V8G|1|CA|G|189|||H
4V8G|1|CA|G|189|||I

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CQ

30S Ribosomal Protein S17