HL_4V8H_027

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8H_027 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1671

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8H|1|AA|G|1265
4V8H|1|AA|G|1266
4V8H|1|AA|C|1267
4V8H|1|AA|A|1268
4V8H|1|AA|A|1269
4V8H|1|AA|C|1270

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal Protein S13

Chain AS

30S Ribosomal Protein S19

Chain AU

30S Ribosomal Protein THX