HL_4V8H_043
3D structure
- PDB id
- 4V8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of HPF bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 4V8H|1|BA|G|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8H_043 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.0756
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
4V8H|1|BA|G|327
4V8H|1|BA|U|328
4V8H|1|BA|G|329
4V8H|1|BA|A|330
4V8H|1|BA|A|331
4V8H|1|BA|A|332
4V8H|1|BA|G|333
4V8H|1|BA|C|334
4V8H|1|BA|C|335
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BF
- 50S Ribosomal Protein L4
- Chain BY
- 50S Ribosomal Protein L24
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