HL_4V8H_070

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

4V8H|1|BA|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8H_070 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.3688

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

4V8H|1|BA|C|1532
4V8H|1|BA|G|1533
4V8H|1|BA|U|1534
4V8H|1|BA|A|1535
4V8H|1|BA|C|1536
4V8H|1|BA|G|1537

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains