HL_4V8H_125

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8H_125 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2904

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V8H|1|CA|U|1012
4V8H|1|CA|G|1013
4V8H|1|CA|A|1014
4V8H|1|CA|A|1015
4V8H|1|CA|A|1016
4V8H|1|CA|G|1017

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S Ribosomal Protein S14

Chain CS

30S Ribosomal Protein S19