HL_4V8H_149

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8H_149 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.0586

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8H|1|DA|C|462
4V8H|1|DA|G|463
4V8H|1|DA|U|464
4V8H|1|DA|G|465
4V8H|1|DA|A|466
4V8H|1|DA|G|467

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DF

50S Ribosomal Protein L4