3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
4V8H|1|AA|C|1363, 4V8H|1|AA|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8H_213 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.197
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V8H|1|AA|G|1356
4V8H|1|AA|A|1357
4V8H|1|AA|U|1358
4V8H|1|AA|C|1359
4V8H|1|AA|A|1360
4V8H|1|AA|G|1361
4V8H|1|AA|C|1362
4V8H|1|AA|C|1363
4V8H|1|AA|A|1363|||A
4V8H|1|AA|U|1364
4V8H|1|AA|G|1365
4V8H|1|AA|C|1366

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AC
30S Ribosomal Protein S3
Chain AI
30S Ribosomal Protein S9
Chain AJ
30S Ribosomal Protein S10
Chain AM
30S Ribosomal Protein S13
Chain AN
30S Ribosomal Protein S14
Chain AU
30S Ribosomal Protein THX

Coloring options:


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