HL_4V8I_057

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAGACAGCGGUCGAG

Length

17 nucleotides

Bulged bases

4V8I|1|BA|A|1046, 4V8I|1|BA|C|1052, 4V8I|1|BA|G|1106, 4V8I|1|BA|G|1107

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8I|1|BA|C|1043
4V8I|1|BA|G|1044
4V8I|1|BA|A|1045
4V8I|1|BA|A|1046
4V8I|1|BA|G|1047
4V8I|1|BA|A|1048
4V8I|1|BA|C|1049
4V8I|1|BA|A|1050
4V8I|1|BA|G|1051
4V8I|1|BA|C|1052
4V8I|1|BA|G|1106
4V8I|1|BA|G|1107
4V8I|1|BA|U|1108
4V8I|1|BA|C|1109
4V8I|1|BA|G|1110
4V8I|1|BA|A|1111
4V8I|1|BA|G|1112

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6