HL_4V8N_008

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1006

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8N|1|AA|C|320
4V8N|1|AA|A|321
4V8N|1|AA|C|322
4V8N|1|AA|U|323
4V8N|1|AA|G|324
4V8N|1|AA|A|325
4V8N|1|AA|G|326
4V8N|1|AA|A|327
4V8N|1|AA|C|328
4V8N|1|AA|A|329
4V8N|1|AA|C|330
4V8N|1|AA|G|331
4V8N|1|AA|G|332
4V8N|1|AA|G|333

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20