HL_4V8N_026

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_026 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3707

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8N|1|AA|G|1164
4V8N|1|AA|C|1165
4V8N|1|AA|G|1166
4V8N|1|AA|A|1168
4V8N|1|AA|A|1169
4V8N|1|AA|A|1170
4V8N|1|AA|G|1171
4V8N|1|AA|C|1172

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain CJ

30S RIBOSOMAL PROTEIN S10