HL_4V8N_032
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGUCUGGUUAA
- Length
- 12 nucleotides
- Bulged bases
- 4V8N|1|AV|U|16, 4V8N|1|AV|C|17, 4V8N|1|AV|U|18, 4V8N|1|AV|G|19, 4V8N|1|AV|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8N_032 not in the Motif Atlas
- Homologous match to HL_4V8N_143
- Geometric discrepancy: 0.0166
- The information below is about HL_4V8N_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67634.1
- Basepair signature
- cWW-cWS-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4V8N|1|AV|U|13
4V8N|1|AV|A|14
4V8N|1|AV|G|15
4V8N|1|AV|U|16
4V8N|1|AV|C|17
4V8N|1|AV|U|18
4V8N|1|AV|G|19
4V8N|1|AV|G|20
4V8N|1|AV|U|21
4V8N|1|AV|U|22
4V8N|1|AV|A|23
4V8N|1|AV|A|24
Current chains
- Chain AV
- E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
Coloring options: