HL_4V8N_034
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V8N|1|AV|A|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8N_034 not in the Motif Atlas
- Homologous match to HL_4V8N_145
- Geometric discrepancy: 0.0097
- The information below is about HL_4V8N_145
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V8N|1|AV|G|55
4V8N|1|AV|U|56
4V8N|1|AV|U|57
4V8N|1|AV|C|58
4V8N|1|AV|G|59
4V8N|1|AV|A|60
4V8N|1|AV|A|61
4V8N|1|AV|U|62
4V8N|1|AV|C|63
Current chains
- Chain AV
- E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: