HL_4V8N_078

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_078 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3382

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8N|1|BA|C|1531
4V8N|1|BA|C|1532
4V8N|1|BA|G|1533
4V8N|1|BA|U|1534
4V8N|1|BA|A|1535
4V8N|1|BA|C|1536
4V8N|1|BA|G|1537
4V8N|1|BA|G|1538

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains