HL_4V8N_083

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGAUGAGCC

Length

11 nucleotides

Bulged bases

4V8N|1|BA|U|1739, 4V8N|1|BA|G|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_083 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3678

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V8N|1|BA|G|1718
4V8N|1|BA|G|1719
4V8N|1|BA|U|1720
4V8N|1|BA|G|1721
4V8N|1|BA|A|1722
4V8N|1|BA|U|1739
4V8N|1|BA|G|1740
4V8N|1|BA|A|1741
4V8N|1|BA|G|1742
4V8N|1|BA|C|1743
4V8N|1|BA|C|1744

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains