HL_4V8N_096

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_096 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0683

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V8N|1|BA|C|2324
4V8N|1|BA|G|2325
4V8N|1|BA|C|2326
4V8N|1|BA|A|2327
4V8N|1|BA|A|2328
4V8N|1|BA|G|2329
4V8N|1|BA|G|2330
4V8N|1|BA|G|2331

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BQ

50S RIBOSOMAL PROTEIN L16