HL_4V8N_100

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_100 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1586

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V8N|1|BA|C|2471
4V8N|1|BA|G|2472
4V8N|1|BA|U|2473
4V8N|1|BA|C|2474
4V8N|1|BA|C|2475
4V8N|1|BA|A|2476
4V8N|1|BA|C|2477
4V8N|1|BA|A|2478
4V8N|1|BA|G|2479

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BQ

50S RIBOSOMAL PROTEIN L16