HL_4V8N_108

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V8N|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_108 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0671

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8N|1|BA|G|2819
4V8N|1|BA|A|2820
4V8N|1|BA|A|2821
4V8N|1|BA|G|2822
4V8N|1|BA|A|2823
4V8N|1|BA|C|2824
4V8N|1|BA|C|2825
4V8N|1|BA|A|2826
4V8N|1|BA|C|2827

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19