HL_4V8N_180

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACAGCCAGUCGAG

Length

18 nucleotides

Bulged bases

4V8N|1|DA|A|1046

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|DA|C|1043
4V8N|1|DA|G|1044
4V8N|1|DA|A|1045
4V8N|1|DA|A|1046
4V8N|1|DA|G|1047
4V8N|1|DA|A|1048
4V8N|1|DA|C|1049
4V8N|1|DA|A|1050
4V8N|1|DA|G|1051
4V8N|1|DA|C|1052
4V8N|1|DA|C|1053
4V8N|1|DA|A|1054
4V8N|1|DA|G|1107
4V8N|1|DA|U|1108
4V8N|1|DA|C|1109
4V8N|1|DA|G|1110
4V8N|1|DA|A|1111
4V8N|1|DA|G|1112

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DJ

50S RIBOSOMAL PROTEIN L10