HL_4V8N_187

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V8N|1|DA|U|1453, 4V8N|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_187 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.491

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8N|1|DA|C|1450|||A
4V8N|1|DA|C|1451
4V8N|1|DA|A|1452
4V8N|1|DA|U|1453
4V8N|1|DA|G|1455
4V8N|1|DA|G|1456
4V8N|1|DA|A|1457
4V8N|1|DA|C|1458
4V8N|1|DA|G|1459
4V8N|1|DA|A|1460
4V8N|1|DA|G|1461

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17