HL_4V8N_202

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

4V8N|1|DA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_202 not in the Motif Atlas

Homologous match to HL_7RQB_051

Geometric discrepancy: 0.4309

The information below is about HL_7RQB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|DA|C|2143
4V8N|1|DA|U|2144
4V8N|1|DA|C|2145
4V8N|1|DA|C|2146
4V8N|1|DA|G|2147
4V8N|1|DA|G|2148

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11