HL_4V8N_206

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

4V8N|1|DA|A|2310, 4V8N|1|DA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_206 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2406

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8N|1|DA|G|2303
4V8N|1|DA|G|2304
4V8N|1|DA|A|2305
4V8N|1|DA|C|2306
4V8N|1|DA|G|2307
4V8N|1|DA|G|2308
4V8N|1|DA|A|2309
4V8N|1|DA|A|2310
4V8N|1|DA|A|2311
4V8N|1|DA|U|2312
4V8N|1|DA|C|2313

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S RIBOSOMAL PROTEIN L5