HL_4V8N_218

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4V8N|1|DA|U|2796, 4V8N|1|DA|G|2802

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_218 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3853

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V8N|1|DA|G|2792
4V8N|1|DA|G|2793
4V8N|1|DA|C|2794
4V8N|1|DA|G|2795
4V8N|1|DA|U|2796
4V8N|1|DA|C|2799
4V8N|1|DA|A|2801
4V8N|1|DA|A|2801|||A
4V8N|1|DA|G|2802
4V8N|1|DA|C|2803
4V8N|1|DA|C|2804

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains