HL_4V8N_228

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V8N|1|BA|G|2307, 4V8N|1|BA|A|2310, 4V8N|1|BA|U|2312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_228 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3139

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V8N|1|BA|G|2302
4V8N|1|BA|G|2303
4V8N|1|BA|G|2304
4V8N|1|BA|A|2305
4V8N|1|BA|C|2306
4V8N|1|BA|G|2307
4V8N|1|BA|G|2308
4V8N|1|BA|A|2309
4V8N|1|BA|A|2310
4V8N|1|BA|A|2311
4V8N|1|BA|U|2312
4V8N|1|BA|C|2313
4V8N|1|BA|C|2314

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5