HL_4V8N_230

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V8N|1|CA|U|420, 4V8N|1|CA|U|421, 4V8N|1|CA|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_230 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3284

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V8N|1|CA|C|418
4V8N|1|CA|C|419
4V8N|1|CA|U|420
4V8N|1|CA|U|421
4V8N|1|CA|C|422
4V8N|1|CA|G|423
4V8N|1|CA|G|424
4V8N|1|CA|G|425

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CD

30S RIBOSOMAL PROTEIN S4