HL_4V8N_231

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

4V8N|1|CA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_231 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3886

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8N|1|CA|C|457
4V8N|1|CA|C|458
4V8N|1|CA|G|460
4V8N|1|CA|A|461
4V8N|1|CA|C|470
4V8N|1|CA|G|471
4V8N|1|CA|A|472
4V8N|1|CA|G|473
4V8N|1|CA|G|474

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16