HL_4V8O_065

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGAAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGU

Length

72 nucleotides

Bulged bases

4V8O|1|BA|A|1046, 4V8O|1|BA|U|1066, 4V8O|1|BA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8O|1|BA|G|1042
4V8O|1|BA|C|1043
4V8O|1|BA|G|1044
4V8O|1|BA|A|1045
4V8O|1|BA|A|1046
4V8O|1|BA|G|1047
4V8O|1|BA|A|1048
4V8O|1|BA|C|1049
4V8O|1|BA|A|1050
4V8O|1|BA|G|1051
4V8O|1|BA|C|1052
4V8O|1|BA|C|1053
4V8O|1|BA|A|1054
4V8O|1|BA|G|1055
4V8O|1|BA|G|1056
4V8O|1|BA|A|1057
4V8O|1|BA|G|1058
4V8O|1|BA|G|1059
4V8O|1|BA|U|1060
4V8O|1|BA|U|1061
4V8O|1|BA|G|1062
4V8O|1|BA|G|1063
4V8O|1|BA|C|1064
4V8O|1|BA|U|1065
4V8O|1|BA|U|1066
4V8O|1|BA|A|1067
4V8O|1|BA|G|1068
4V8O|1|BA|A|1069
4V8O|1|BA|A|1070
4V8O|1|BA|G|1071
4V8O|1|BA|C|1072
4V8O|1|BA|A|1073
4V8O|1|BA|G|1074
4V8O|1|BA|C|1075
4V8O|1|BA|C|1076
4V8O|1|BA|A|1077
4V8O|1|BA|U|1078
4V8O|1|BA|C|1079
4V8O|1|BA|C|1080
4V8O|1|BA|U|1081
4V8O|1|BA|U|1082
4V8O|1|BA|U|1083
4V8O|1|BA|A|1084
4V8O|1|BA|A|1085
4V8O|1|BA|A|1086
4V8O|1|BA|G|1087
4V8O|1|BA|A|1088
4V8O|1|BA|G|1089
4V8O|1|BA|U|1090
4V8O|1|BA|G|1091
4V8O|1|BA|C|1092
4V8O|1|BA|G|1093
4V8O|1|BA|U|1094
4V8O|1|BA|A|1095
4V8O|1|BA|A|1096
4V8O|1|BA|U|1097
4V8O|1|BA|A|1098
4V8O|1|BA|G|1099
4V8O|1|BA|C|1100
4V8O|1|BA|U|1101
4V8O|1|BA|C|1102
4V8O|1|BA|A|1103
4V8O|1|BA|C|1104
4V8O|1|BA|U|1105
4V8O|1|BA|G|1106
4V8O|1|BA|G|1107
4V8O|1|BA|U|1108
4V8O|1|BA|C|1109
4V8O|1|BA|G|1110
4V8O|1|BA|A|1111
4V8O|1|BA|G|1112
4V8O|1|BA|U|1113

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BJ

50S RIBOSOMAL PROTEIN L10

Chain BK

50S RIBOSOMAL PROTEIN L11

Chain BZ

50S RIBOSOMAL PROTEIN L25