HL_4V8O_118

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_118 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.256

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8O|1|BA|G|977
4V8O|1|BA|G|978
4V8O|1|BA|G|979
4V8O|1|BA|A|980
4V8O|1|BA|A|981
4V8O|1|BA|C|982
4V8O|1|BA|A|983
4V8O|1|BA|A|984
4V8O|1|BA|C|985
4V8O|1|BA|C|986

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S RIBOSOMAL PROTEIN L20