HL_4V8O_126

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCUGCAAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_126 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3769

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V8O|1|BA|G|2354
4V8O|1|BA|C|2355
4V8O|1|BA|C|2356
4V8O|1|BA|U|2357
4V8O|1|BA|G|2358
4V8O|1|BA|C|2359
4V8O|1|BA|A|2360
4V8O|1|BA|A|2361
4V8O|1|BA|G|2362
4V8O|1|BA|C|2363

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15