HL_4V8O_131

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4V8O|1|BA|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_131 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.1961

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V8O|1|BA|U|566
4V8O|1|BA|A|567
4V8O|1|BA|U|568
4V8O|1|BA|U|569
4V8O|1|BA|G|570
4V8O|1|BA|A|571
4V8O|1|BA|A|572
4V8O|1|BA|G|573
4V8O|1|BA|C|574
4V8O|1|BA|A|575

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BP

50S RIBOSOMAL PROTEIN L15

Chain BV

50S RIBOSOMAL PROTEIN L21