HL_4V8Q_008
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_008 not in the Motif Atlas
- Homologous match to HL_4WF9_008
- Geometric discrepancy: 0.0858
- The information below is about HL_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V8Q|1|AA|C|246
4V8Q|1|AA|G|247
4V8Q|1|AA|G|248
4V8Q|1|AA|C|249
4V8Q|1|AA|G|250
4V8Q|1|AA|A|251
4V8Q|1|AA|G|252
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A1
- 50S RIBOSOMAL PROTEIN L28
- Chain A8
- 50S RIBOSOMAL PROTEIN L35
- Chain AP
- 50S RIBOSOMAL PROTEIN L15
- Chain BW
- Transfer RNA; tRNA
Coloring options: