HL_4V8Q_014
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGACCACC
- Length
- 8 nucleotides
- Bulged bases
- 4V8Q|1|AA|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_014 not in the Motif Atlas
- Homologous match to HL_7RQB_014
- Geometric discrepancy: 0.0784
- The information below is about HL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96598.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8Q|1|AA|G|410
4V8Q|1|AA|G|411
4V8Q|1|AA|A|412
4V8Q|1|AA|C|413
4V8Q|1|AA|C|414
4V8Q|1|AA|A|415
4V8Q|1|AA|C|416
4V8Q|1|AA|C|417
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AP
- 50S RIBOSOMAL PROTEIN L15
Coloring options: